Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs426643 chr17:39329566 C/T 0.000153 111 0 20.25 13.15 KM Plot
LAML rs4284331 chr10:134972183 C/T 4.34E-5 111 16.3 19.33 3 KM Plot
LAML rs4284333 chr10:134316700 G/A 0.000158 111 0 20.77 12.18 KM Plot
LAML rs4292025 chr19:12540103 C/T 2.74E-5 110 6.13 21.82 13.1 KM Plot
LAML rs4300329 chr10:134316416 A/G 0.000158 111 0 20.77 12.18 KM Plot
LAML rs4399276 chr10:78978891 C/G 7.34E-5 111 13.15 18.78 0 KM Plot
LAML rs442577 chr17:39314171 A/G 0.000165 110 13.1 20.25 0 KM Plot
LAML rs4434917 chr10:134971800 G/T 4.34E-5 111 16.3 19.33 3 KM Plot
LAML rs4448121 chr6:127701790 G/C 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs4470332 chr2:62576006 C/T 7.94E-5 108 16.17 10.63 0 KM Plot
LAML rs4472373 chr6:127705983 G/A 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs4486042 chr6:127700671 A/G 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs4525607 chr19:12539878 G/T 1.87E-5 111 13.1 22.37 6.13 KM Plot
LAML rs4539819 chr2:3223885 G/C 5.94E-5 111 0 14.7 15.2 KM Plot
LAML rs45463097 chr14:90744188 G/A 1.22E-5 109 12.7 21.87 1.03 KM Plot